Basic Information
Locus ID:
COCNU_11G002720
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 9914713 | 9916702 | - | COCNU_11G002720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 31,610.69 Da | 62.50 | 64.32 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 248 | 285 | 6.65395E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 247 | 289 | 8.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 247 | 292 | 1.23E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 216 | 296 | 1.4E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 248 | 285 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 248 | 286 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 236 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_038984303.1 | uncharacterized protein LOC108511419 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8K0INR4 | RING-type domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_11G002720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology