Basic Information
Locus ID:
COCNU_10G009300
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 45662534 | 45663208 | + | COCNU_10G009300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.92 | 21,882.65 Da | 55.50 | 62.16 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 96 | 160 | 2.06681E-19 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 96 | 163 | 2.2E-14 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 93 | 166 | 1.57E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 79 | 173 | 3.3E-20 | IPR036910 |
| SMART | SM00398 | hmgende2 | 95 | 164 | 7.4E-15 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 96 | 163 | 15.495012 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 101 | - | - |
| Coils | Coil | Coil | 152 | 172 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010905242.1 | high mobility group B protein 9 isoform X4 [Elaeis guineensis] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N8S4 | Putative High mobility group B protein 9 OS=Cocos nucifera OX=13894 GN=COCNU_10G009300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology