Basic Information
Locus ID:
COCNU_10G007340
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 20322206 | 20325555 | + | COCNU_10G007340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 30,695.24 Da | 49.93 | 56.64 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 198 | 256 | 1.8E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 15 | 96 | 7.4E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 150 | 193 | 1.3E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 199 | 7.66E-10 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 87 | 144 | 8.76E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 11 | 86 | 7.85E-17 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 195 | 1.9E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 222 | 261 | 6.1E-20 | - |
| SMART | SM00184 | ring_2 | 151 | 193 | 7.1E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 8 | 84 | 25.45882 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 86 | 150 | 34.152962 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 151 | 194 | 11.972923 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_010933180.1 | E3 ubiquitin-protein ligase RZFP34 [Elaeis guineensis] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N7X2 | E3 ubiquitin-protein ligase RZFP34 OS=Cocos nucifera OX=13894 GN=COCNU_10G007340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology