Basic Information
Locus ID:
COCNU_10G006860
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 18420306 | 18471329 | + | COCNU_10G006860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 54,375.85 Da | 28.29 | 104.10 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 265 | 360 | 1.34008E-28 | - |
| Pfam | PF00168 | C2 domain | 263 | 359 | 1.8E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 247 | 8.6E-18 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 261 | 392 | 8.18E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 247 | 419 | 9.2E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 264 | 362 | 6.3E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 246 | 365 | 20.747566 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 24.019947 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 280 | 292 | 1.3E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 327 | 335 | 1.3E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 305 | 318 | 1.3E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 498 | - | - |
| Coils | Coil | Coil | 398 | 418 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_010934086.1 | synaptotagmin-4 isoform X1 [Elaeis guineensis] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IMU4 | Synaptotagmin-4 OS=Cocos nucifera OX=13894 GN=COCNU_10G006860 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology