Basic Information
Locus ID:
COCNU_10G006190
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 16096167 | 16116162 | - | COCNU_10G006190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 28,414.53 Da | 45.25 | 88.97 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 191 | 234 | 8.47857E-12 | - |
| Pfam | PF13639 | Ring finger domain | 190 | 234 | 2.2E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 91 | 135 | 1.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 244 | 1.88E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 86 | 141 | 1.24E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 238 | 1.4E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 142 | 3.9E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 91 | 135 | 0.0065 | IPR011016 |
| SMART | SM00744 | ringv_2 | 190 | 234 | 0.0081 | IPR011016 |
| SMART | SM00184 | ring_2 | 191 | 233 | 2.7E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 92 | 134 | 1.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 135 | 12.326995 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 191 | 234 | 12.194218 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63840.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010934014.1 | E3 ubiquitin-protein ligase RHA1B [Elaeis guineensis] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0ILT1 | Putative E3 ubiquitin-protein ligase RHA1B OS=Cocos nucifera OX=13894 GN=COCNU_10G006190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology