Basic Information
Locus ID:
COCNU_10G006160
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 15849591 | 15877210 | + | COCNU_10G006160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 24,284.42 Da | 52.03 | 82.82 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 76 | 1.62561E-43 | IPR033896 |
| Pfam | PF01486 | K-box region | 81 | 168 | 2.0E-25 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | 1.3E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 82 | 2.75E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 91 | 2.3E-30 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.2E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.496664 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 83 | 175 | 13.877584 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.7E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.7E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.7E-30 | IPR002100 |
| Coils | Coil | Coil | 139 | 166 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_010934010.1 | MADS-box transcription factor 50-like isoform X4 [Elaeis guineensis] | 0 |
| A2Z9Q7 | MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0N8G5 | MADS-box transcription factor 50-like OS=Cocos nucifera OX=13894 GN=COCNU_10G006160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology