Basic Information
Locus ID:
COCNU_10G005700
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the DapA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 14402175 | 14415186 | - | COCNU_10G005700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 83,581.42 Da | 49.48 | 77.45 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00950 | DHDPS | 464 | 734 | 7.76125E-109 | IPR005263 |
| CDD | cd14703 | bZIP_plant_RF2 | 264 | 315 | 3.87383E-26 | IPR044759 |
| Pfam | PF00701 | Dihydrodipicolinate synthetase family | 463 | 736 | 2.4E-89 | IPR002220 |
| Pfam | PF00170 | bZIP transcription factor | 263 | 321 | 2.9E-9 | IPR004827 |
| SUPERFAMILY | SSF57959 | Leucine zipper domain | 263 | 313 | 1.13E-10 | - |
| SUPERFAMILY | SSF51569 | Aldolase | 465 | 737 | 1.05E-60 | - |
| Gene3D | G3DSA:1.20.5.170 | - | 262 | 314 | 2.2E-11 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 456 | 762 | 7.5E-91 | IPR013785 |
| SMART | SM00338 | brlzneu | 259 | 323 | 3.2E-17 | IPR004827 |
| SMART | SM01130 | DHDPS_2 | 462 | 738 | 5.6E-67 | IPR002220 |
| TIGRFAM | TIGR00674 | dapA: 4-hydroxy-tetrahydrodipicolinate synthase | 465 | 733 | 9.9E-62 | IPR005263 |
| ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 261 | 324 | 10.852034 | IPR004827 |
| ProSitePatterns | PS00665 | Dihydrodipicolinate synthase signature 1. | 498 | 515 | - | IPR020624 |
| ProSitePatterns | PS00666 | Dihydrodipicolinate synthase signature 2. | 591 | 621 | - | IPR020625 |
| PRINTS | PR00146 | Dihydrodipicolinate synthase signature | 531 | 549 | 1.0E-36 | IPR002220 |
| PRINTS | PR00146 | Dihydrodipicolinate synthase signature | 586 | 603 | 1.0E-36 | IPR002220 |
| PRINTS | PR00146 | Dihydrodipicolinate synthase signature | 495 | 516 | 1.0E-36 | IPR002220 |
| PRINTS | PR00146 | Dihydrodipicolinate synthase signature | 563 | 579 | 1.0E-36 | IPR002220 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 225 | - | - |
| Coils | Coil | Coil | 279 | 313 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00261 (Monobactam biosynthesis)
map00261 (Monobactam biosynthesis)
ko00300 (Lysine biosynthesis)
map00300 (Lysine biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45440.1 | dihydrodipicolinate synthase. Encodes a protein that likely has dihydropicolinate synthase activity based on its mutant phenotype of decreased lysine levels and increased aspartate levels. The mutant also has increased levels of threonine. The enzyme is predicted to localize to the chloroplast. | 0 |
| RefSeq | XP_010933932.1 | 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic isoform X1 [Elaeis guineensis] | 0 |
| Q42948 | 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic OS=Nicotiana tabacum OX=4097 GN=DHPS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N8E4 | 4-hydroxy-tetrahydrodipicolinate synthase OS=Cocos nucifera OX=13894 GN=COCNU_10G005700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology