Basic Information
Locus ID:
COCNU_10G005190
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase XBOS33
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 12602261 | 12606829 | - | COCNU_10G005190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 51,939.56 Da | 43.89 | 79.33 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 108 | 2.3E-13 | - |
| Pfam | PF00023 | Ankyrin repeat | 161 | 190 | 2.1E-5 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 204 | 256 | 1.5E-6 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 260 | 3.73E-37 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 135 | 253 | 3.1E-22 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 8 | 117 | 8.8E-20 | IPR036770 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 9.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 160 | 189 | 3.4E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 87 | 118 | 0.12 | IPR002110 |
| SMART | SM00248 | ANK_2a | 203 | 235 | 0.0018 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 160 | 188 | 11.903864 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 203 | 229 | 9.323959 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 12.832462 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 203 | 229 | 9.303788 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 13.94479 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 87 | 108 | 9.67119 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 160 | 192 | 12.52916 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 87 | 108 | 9.648697 | - |
| PRINTS | PR01415 | Ankyrin repeat signature | 176 | 190 | 3.4E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 88 | 103 | 3.4E-6 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 428 | - | - |
| Coils | Coil | Coil | 453 | 465 | - | - |
| Coils | Coil | Coil | 407 | 427 | - | - |
| Coils | Coil | Coil | 349 | 400 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_010933862.1 | probable E3 ubiquitin-protein ligase XBOS33 isoform X2 [Elaeis guineensis] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0ILV5 | ANK_REP_REGION domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_10G005190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology