Basic Information
Locus ID:
COCNU_10G002640
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5997258 | 5999411 | + | COCNU_10G002640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 40,605.26 Da | 68.81 | 77.25 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 146 | 189 | 1.3639E-17 | - |
| Pfam | PF13639 | Ring finger domain | 146 | 189 | 6.9E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 195 | 1.11E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 197 | 9.6E-22 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 143 | 196 | 0.0048 | - |
| SMART | SM00184 | ring_2 | 147 | 188 | 7.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 147 | 189 | 13.094151 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 218 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010933477.1 | E3 ubiquitin-protein ligase Os04g0590900 [Elaeis guineensis] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0ILA2 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_10G002640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology