Basic Information
Locus ID:
COCNU_10G002520
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5761069 | 5763858 | - | COCNU_10G002520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 73,290.17 Da | 53.73 | 68.79 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 490 | 566 | 3.8845E-46 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 497 | 542 | 4.4E-11 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 65 | 247 | 2.0E-52 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 496 | 565 | 4.32E-19 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 489 | 570 | 6.5E-18 | IPR036638 |
| SMART | SM00353 | finulus | 499 | 548 | 4.0E-17 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 493 | 542 | 17.440767 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 582 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 491 | - | - |
| Coils | Coil | Coil | 539 | 566 | - | - |
| Coils | Coil | Coil | 106 | 135 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_010933462.1 | transcription factor MYC2 [Elaeis guineensis] | 0 |
| Q336P5 | Transcription factor MYC2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4D6C6M2 | MYC2 OS=Cocos nucifera OX=13894 GN=COCNU_10G002520 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology