Basic Information
Locus ID:
COCNU_10G002350
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5542993 | 5549933 | - | COCNU_10G002350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 26,521.44 Da | 22.72 | 72.97 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 59 | 2.8E-5 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 60 | 5.7E-10 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 77 | 5.1E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 77 | 0.0019 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 81 | 10.445465 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 223 | - | - |
| Coils | Coil | Coil | 200 | 220 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_010933436.1 | binding partner of ACD11 1 [Elaeis guineensis] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IKT6 | Binding partner of ACD11 1 OS=Cocos nucifera OX=13894 GN=COCNU_10G002350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology