Basic Information
Locus ID:
COCNU_10G002330
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5522623 | 5524180 | - | COCNU_10G002330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 18,369.24 Da | 37.83 | 82.62 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 97 | 159 | 2.48504E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 95 | 158 | 2.8E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 21 | 82 | 2.6E-16 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 11 | 159 | 5.46E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 6 | 86 | 9.8E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 87 | 166 | 4.7E-24 | - |
| SMART | SM00054 | efh_1 | 57 | 85 | 0.013 | IPR002048 |
| SMART | SM00054 | efh_1 | 21 | 49 | 6.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 97 | 125 | 3.8E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 133 | 161 | 2.9E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 129 | 164 | 13.676544 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 17 | 52 | 14.84815 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 53 | 88 | 10.775421 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 93 | 128 | 15.517639 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 106 | 118 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 30 | 42 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 66 | 78 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 142 | 154 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_010933432.1 | probable calcium-binding protein CML18 [Elaeis guineensis] | 0 |
| Q9M8U1 | Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0ILU7 | Putative calcium-binding protein CML17 OS=Cocos nucifera OX=13894 GN=COCNU_10G002330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology