Basic Information
Locus ID:
COCNU_10G002010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 4566959 | 4592510 | - | COCNU_10G002010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 136,977.27 Da | 39.69 | 84.01 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02824 | TGS domain | 37 | 88 | 2.8E-6 | IPR004095 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1026 | 1060 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 607 | 645 | 1.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 601 | 1215 | 5.81E-38 | IPR011047 |
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 488 | 818 | 2.48E-30 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 458 | 696 | 9.0E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 697 | 861 | 2.1E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 933 | 1219 | 5.7E-28 | IPR015943 |
| Gene3D | G3DSA:3.10.20.30 | - | 35 | 90 | 3.6E-5 | IPR012675 |
| SMART | SM00320 | WD40_4 | 978 | 1018 | 0.79 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 537 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1111 | 1153 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 738 | 778 | 6.1 | IPR001680 |
| SMART | SM00668 | ctlh | 197 | 255 | 4.2E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1021 | 1060 | 2.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 645 | 7.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 648 | 689 | 0.0088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 694 | 735 | 85.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 937 | 975 | 160.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 177 | 199 | 7.79162 | IPR006594 |
| ProSiteProfiles | PS50889 | S4 RNA-binding domain profile. | 63 | 118 | 9.030792 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 197 | 255 | 12.748663 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1028 | 1069 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 611 | 654 | 11.577833 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1028 | 1062 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 611 | 650 | 9.124694 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1047 | 1061 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 632 | 646 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1216 | 1239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1208 | 1245 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_019709294.1 | protein TOPLESS-RELATED PROTEIN 2 isoform X3 [Elaeis guineensis] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0ILN7 | Protein TPR2 OS=Cocos nucifera OX=13894 GN=COCNU_10G002010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology