Basic Information
Locus ID:
COCNU_10G000720
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 2296026 | 2304726 | - | COCNU_10G000720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 48,565.78 Da | 35.16 | 74.91 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 220 | 444 | 1.15555E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 328 | 361 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 281 | 6.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 414 | 444 | 0.038 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 207 | 444 | 7.1E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 296 | 444 | 1.0E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 188 | 295 | 1.1E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 284 | 320 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 361 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 240 | 48.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 403 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 281 | 4.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 444 | 0.012 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 248 | 290 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 248 | 281 | 8.834696 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 330 | 370 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 412 | 444 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 412 | 444 | 12.246197 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.1 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_010934267.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Elaeis guineensis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N7S2 | WD_REPEATS_REGION domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_10G000720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology