Basic Information
Locus ID:
COCNU_10G000190
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 991679 | 1001932 | + | COCNU_10G000190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 41,880.67 Da | 50.93 | 58.20 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 302 | 342 | 4.39745E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 301 | 347 | 5.3E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 302 | 352 | 1.92E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 288 | 351 | 5.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 303 | 341 | 2.9E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 303 | 342 | 11.353297 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 33 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010934355.1 | probable E3 ubiquitin-protein ligase LOG2 isoform X1 [Elaeis guineensis] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IKP0 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_10G000190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology