Basic Information
Locus ID:
COCNU_09G010220
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 59209028 | 59224418 | + | COCNU_09G010220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 159,420.45 Da | 56.35 | 80.42 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01466 | vWA_C3HC4_type | 342 | 516 | 7.7235E-55 | - |
| CDD | cd16448 | RING-H2 | 154 | 198 | 2.90442E-10 | - |
| CDD | cd14066 | STKc_IRAK | 1041 | 1316 | 4.91493E-91 | - |
| Pfam | PF14624 | VWA / Hh protein intein-like | 691 | 763 | 5.8E-22 | IPR032838 |
| Pfam | PF00069 | Protein kinase domain | 1037 | 1314 | 2.8E-43 | IPR000719 |
| Pfam | PF17123 | RING-like zinc finger | 154 | 183 | 4.3E-9 | IPR001841 |
| Pfam | PF00092 | von Willebrand factor type A domain | 343 | 526 | 2.8E-25 | IPR002035 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 204 | 7.88E-14 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 339 | 529 | 8.76E-32 | IPR036465 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1016 | 1316 | 5.74E-77 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1004 | 1115 | 2.4E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 203 | 1.2E-10 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1116 | 1337 | 1.7E-59 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 342 | 530 | 9.3E-43 | IPR036465 |
| SMART | SM00220 | serkin_6 | 1035 | 1319 | 3.0E-34 | IPR000719 |
| SMART | SM00184 | ring_2 | 154 | 197 | 7.2E-6 | IPR001841 |
| SMART | SM00327 | VWA_4 | 341 | 526 | 9.0E-26 | IPR002035 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1035 | 1319 | 37.163246 | IPR000719 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 343 | 536 | 17.191402 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 154 | 198 | 11.795887 | IPR001841 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1041 | 1063 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1161 | 1173 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_010935893.1 | E3 ubiquitin-protein ligase WAV3 [Elaeis guineensis] | 0 |
| Q8VYY5 | Receptor-like serine/threonine-protein kinase NCRK OS=Arabidopsis thaliana OX=3702 GN=NCRK PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0ILI1 | Putative E3 ubiquitin-protein ligase WAV3 OS=Cocos nucifera OX=13894 GN=COCNU_09G010220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology