Basic Information
Locus ID:
COCNU_09G009570
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 57131270 | 57150368 | + | COCNU_09G009570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 87,818.09 Da | 42.81 | 69.11 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 516 | 801 | 2.13703E-62 | - |
| Pfam | PF08513 | LisH | 10 | 35 | 3.9E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 601 | 638 | 7.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 683 | 718 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 561 | 594 | 8.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 552 | 0.0072 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 514 | 800 | 9.71E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 647 | 804 | 3.8E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 503 | 646 | 5.0E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 598 | 638 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 762 | 801 | 0.046 | IPR001680 |
| SMART | SM00320 | WD40_4 | 555 | 594 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 680 | 718 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 513 | 552 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 721 | 760 | 2.3 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 769 | 805 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 769 | 805 | 10.258324 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 562 | 594 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 520 | 561 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 605 | 638 | 8.597424 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.032727 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 605 | 647 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 562 | 594 | 10.337415 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 424 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_010936000.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Elaeis guineensis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IL75 | Transcriptional corepressor LEUNIG-like protein OS=Cocos nucifera OX=13894 GN=COCNU_09G009570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology