Basic Information
Locus ID:
COCNU_09G008700
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 54862066 | 54867731 | + | COCNU_09G008700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 68,599.02 Da | 34.71 | 98.20 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 263 | 305 | 1.04207E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 385 | 424 | 1.3E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 259 | 329 | 1.9E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 468 | 506 | 8.1E-8 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 351 | 629 | 2.3E-51 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 334 | 5.05E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 341 | 634 | 1.7E-57 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 332 | 3.2E-31 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 17 | 133 | 5.8E-9 | IPR036537 |
| SMART | SM00185 | arm_5 | 508 | 548 | 20.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 385 | 425 | 2.2E-6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 262 | 325 | 2.4E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 467 | 507 | 0.02 | IPR000225 |
| SMART | SM00185 | arm_5 | 549 | 589 | 2.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 426 | 466 | 0.079 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 258 | 332 | 44.062199 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 396 | 438 | 12.8624 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_010935712.1 | U-box domain-containing protein 12 isoform X1 [Elaeis guineensis] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IKK4 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_09G008700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology