Basic Information
Locus ID:
COCNU_09G006950
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 51261848 | 51279012 | + | COCNU_09G006950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 84,840.18 Da | 41.15 | 78.52 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 262 | 1.28525E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 10 | 45 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 53 | 88 | 4.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 214 | 1.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 172 | 6.4E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 130 | 1.3E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 620 | 777 | 1.6E-50 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 297 | 2.62E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 140 | 2.8E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 141 | 301 | 4.6E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 9.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 2.5E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 5.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 1.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 6.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 46 | 0.0047 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 90 | 11.681953 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 15.72169 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 17.960709 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 13.896486 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 55 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 182 | 217 | 12.209223 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 15.35409 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 1.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 1.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 1.7E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 2 | 780 | 20.671087 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 586 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010935617.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Elaeis guineensis] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N6X2 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Cocos nucifera OX=13894 GN=COCNU_09G006950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology