Basic Information
Locus ID:
COCNU_09G006200
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 49779541 | 49792468 | - | COCNU_09G006200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 58,387.86 Da | 49.11 | 84.24 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09254 | AP_delta-COPI_MHD | 284 | 521 | 1.05818E-104 | - |
| CDD | cd14830 | Delta_COP_N | 4 | 133 | 1.18705E-83 | - |
| Pfam | PF00928 | Adaptor complexes medium subunit family | 282 | 523 | 2.0E-33 | IPR028565 |
| SUPERFAMILY | SSF64356 | SNARE-like | 5 | 141 | 1.1E-28 | IPR011012 |
| SUPERFAMILY | SSF49447 | Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 282 | 523 | 9.55E-29 | IPR036168 |
| Gene3D | G3DSA:2.60.40.1170 | Mu homology domain, subdomain B | 286 | 502 | 3.8E-10 | - |
| Gene3D | G3DSA:2.60.40.1170 | Mu homology domain, subdomain B | 387 | 486 | 3.8E-10 | - |
| Gene3D | G3DSA:3.30.450.60 | - | 3 | 141 | 6.1E-13 | - |
| ProSiteProfiles | PS51072 | Mu homology domain (MHD) profile. | 283 | 524 | 34.537437 | IPR028565 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 246 | - | - |
| Coils | Coil | Coil | 149 | 176 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05010.1 | clathrin adaptor complexes medium subunit family protein. | 0 |
| RefSeq | XP_010935474.1 | coatomer subunit delta-2 [Elaeis guineensis] | 0 |
| Q0DJA0 | Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0310800 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N6U9 | Coatomer subunit delta OS=Cocos nucifera OX=13894 GN=COCNU_09G006200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg26429, jg28366, jg30064 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_10486, gene_15817, gene_19740 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010639 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_7g165740, BVRB_8g197370, BVRB_9g219960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40714, Sbi_jg50723 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2278 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005227, GOSA_00006366 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01794, Sgl06954, Sgl55978, Sgl61150 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011885, gene:ENSEOMG00000018025 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0010730, CQ.Regalona.r1.7BG0010380 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30079110, pistato.v30079140, pistato.v30111950 ... |
| Apiaceae | Apium graveolens | 2 | Ag6G01291, Ag6G02750 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G006200, scaffold008549G000060 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717273, gene-LOC103723959 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.3430.V1.1, AsparagusV1_08.2817.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G23899, Ftri12G04119, Ftri6G30769 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013243m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37790.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g055610.2N, BniB05g029420.2N, BniB08g002010.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G1578, Ceq08G1941 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1694, Cgl08G2018 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g00180 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0225s00026.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g16530 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2185 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.392 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026743 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06882, Lb2G11563 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3778, AH09.2359, BH02.3790, BH07.4103, BH09.2563 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0038900, gene-QOZ80_1BG0088920 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0064240.1, HORVU.MOREX.r3.3HG0303600.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013437, gene-QYE76_013473, gene-QYE76_055562 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G024160, Oco09G005500, Oco09G006330, Oco10G006490 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g61710.1, LOC_Os05g24601.1, LOC_Os08g28080.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G326700, gene-BS78_04G121900 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0505134, Pt_Chr0505382, Pt_Chr0602026 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G033450, Chr19G006290, Chr19G006380, Chr24G005370 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G408100, Tel3E01G564600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG037070, gene_TRIDC1BG042050 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G246900.1, TraesCS1B02G257500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb138410_P003, Zm00001eb411050_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1098 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6399 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1483, evm.TU.LG11.833, evm.TU.LG18.1180 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g00240, gene.Posoc07g15660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1003 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13485 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10864 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9239 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.269, evm.TU.utg000004l.270 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003991 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3672 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7699 |
| Salicaceae | Populus euphratica | 3 | populus_peu29103, populus_peu29104, populus_peu30490 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598636 |
| Solanaceae | Solanum chilense | 2 | SOLCI002910600, SOLCI003632500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002414, gene-LOC107006198 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10596_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0639 |
| Zosteraceae | Zostera marina | 2 | Zosma03g17550.v3.1, Zosma03g18220.v3.1 |