Basic Information
Locus ID:
COCNU_09G006150
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the iron ascorbate-dependent oxidoreductase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 49631229 | 49655785 | + | COCNU_09G006150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 63,759.67 Da | 34.67 | 84.19 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 61 | 207 | 9.7E-37 | IPR011545 |
| Pfam | PF14226 | non-haem dioxygenase in morphine synthesis N-terminal | 322 | 419 | 2.2E-16 | IPR026992 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 200 | 249 | 3.6E-5 | IPR027417 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 316 | 555 | 9.61E-49 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 25 | 216 | 2.06E-50 | IPR027417 |
| Gene3D | G3DSA:2.60.120.330 | - | 493 | 566 | 9.4E-14 | IPR027443 |
| Gene3D | G3DSA:3.40.50.300 | - | 23 | 237 | 4.6E-53 | IPR027417 |
| Gene3D | G3DSA:2.60.120.330 | - | 314 | 489 | 1.9E-26 | IPR027443 |
| SMART | SM00487 | ultradead3 | 55 | 236 | 1.9E-36 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 67 | 237 | 19.324018 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 36 | 64 | 10.832837 | IPR014014 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Reaction:
R03008 (Gibberellin A1 + 2-Oxoglutarate + Oxygen <=> Gibberellin A8 + Succinate + CO2)
R03809 (Gibberellin A20 + 2-Oxoglutarate + Oxygen <=> Gibberellin A29 + Succinate + CO2)
R06337 (Gibberellin A9 + 2-Oxoglutarate + Oxygen <=> Gibberellin A51 + Succinate + CO2)
R06338 (Gibberellin A4 + 2-Oxoglutarate + Oxygen <=> Gibberellin A34 + Succinate + CO2)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_010935461.1 | eukaryotic initiation factor 4A-3 [Elaeis guineensis] | 0 |
| Q5VNM3 | Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IK25 | Putative gibberellin 2-beta-dioxygenase 8-like OS=Cocos nucifera OX=13894 GN=COCNU_09G006150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology