Basic Information
Locus ID:
COCNU_09G005480
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
spliceosomal complex assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 48195306 | 48200441 | - | COCNU_09G005480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 16,217.32 Da | 37.43 | 77.83 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 71 | 141 | 4.32E-7 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 46 | 140 | 1.5E-15 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17530.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_008812382.2 | serine/threonine-protein kinase SRPK-like [Phoenix dactylifera] | 0 |
| B8Y466 | SRSF protein kinase 3 OS=Sus scrofa OX=9823 GN=SRPK3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IK32 | Protein kinase domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_09G005480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah030804 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005657 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006101, gene:ENSEOMG00000039927 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G000600, COCNU_09G005480, scaffold057081G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120106072 |
| Brassicaceae | Brassica nigra | 1 | BniB02g013860.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1007 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g15450 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6928 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6120 |
| Salicaceae | Populus euphratica | 1 | populus_peu23229 |