Basic Information
Locus ID:
COCNU_09G005230
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Farnesoic acid 0-methyl transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 47511907 | 47562347 | - | COCNU_09G005230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 167,876.66 Da | 39.51 | 88.03 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 430 | 506 | 2.91793E-10 | - |
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 570 | 640 | 6.42192E-18 | - |
| Pfam | PF00651 | BTB/POZ domain | 562 | 670 | 2.9E-18 | IPR000210 |
| Pfam | PF12248 | Farnesoic acid 0-methyl transferase | 276 | 373 | 3.7E-22 | IPR022041 |
| Pfam | PF06426 | Serine acetyltransferase, N-terminal | 12 | 110 | 4.0E-34 | IPR010493 |
| Pfam | PF00754 | F5/8 type C domain | 856 | 944 | 7.5E-10 | IPR000421 |
| Pfam | PF00132 | Bacterial transferase hexapeptide (six repeats) | 124 | 157 | 2.3E-7 | IPR001451 |
| Pfam | PF00651 | BTB/POZ domain | 424 | 521 | 2.7E-10 | IPR000210 |
| Pfam | PF00777 | Glycosyltransferase family 29 (sialyltransferase) | 1065 | 1165 | 2.0E-21 | IPR001675 |
| Pfam | PF03619 | Organic solute transporter Ostalpha | 1241 | 1296 | 2.1E-13 | IPR005178 |
| SUPERFAMILY | SSF54695 | POZ domain | 558 | 671 | 7.06E-21 | IPR011333 |
| SUPERFAMILY | SSF51161 | Trimeric LpxA-like enzymes | 11 | 165 | 4.85E-25 | IPR011004 |
| SUPERFAMILY | SSF54695 | POZ domain | 422 | 519 | 4.87E-11 | IPR011333 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 842 | 977 | 4.25E-11 | IPR008979 |
| Gene3D | G3DSA:2.60.120.260 | - | 849 | 991 | 1.6E-7 | - |
| Gene3D | G3DSA:3.90.1480.20 | Glycosyl transferase family 29 | 1055 | 1182 | 7.3E-27 | IPR038578 |
| Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 109 | 197 | 5.6E-13 | - |
| Gene3D | G3DSA:1.10.3130.10 | serine acetyltransferase, domain 1 | 1 | 108 | 5.4E-32 | IPR042122 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 419 | 542 | 9.9E-14 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 699 | 796 | 1.9E-5 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 558 | 698 | 2.2E-24 | IPR011333 |
| SMART | SM00225 | BTB_4 | 431 | 523 | 2.1E-12 | IPR000210 |
| SMART | SM00971 | SATase_N_2_a | 12 | 113 | 2.5E-40 | IPR010493 |
| SMART | SM00225 | BTB_4 | 571 | 674 | 2.2E-13 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 431 | 493 | 11.481555 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 571 | 640 | 17.169106 | IPR000210 |
| ProSitePatterns | PS00101 | Hexapeptide-repeat containing-transferases signature. | 133 | 161 | - | IPR018357 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1415 | 1429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1415 | 1486 | - | - |
| Coils | Coil | Coil | 1401 | 1428 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30600.1 | BTB/POZ domain-containing protein. | 0 |
| RefSeq | XP_019709653.1 | BTB/POZ domain-containing protein At2g30600 [Elaeis guineensis] | 0 |
| Q8LEV3 | BTB/POZ domain-containing protein At2g30600 OS=Arabidopsis thaliana OX=3702 GN=At2g30600/At2g30610 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0ILG4 | Putative BTB/POZ domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_09G005230 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6055 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8649 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035916 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39869, Sbi_jg55201 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14460 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014225 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12345, Sgl17629 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020317, gene:ENSEOMG00000034283 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022970, CQ.Regalona.r1.1BG0001290 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048400 |
| Apiaceae | Apium graveolens | 1 | Ag3G02602 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005230 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701097 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1057.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G03754 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G30600.5 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016264m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g13150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g013530.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0843 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0853s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g18230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.86 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037415 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21253 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.14, BH06.5, CH06.5 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0457480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0318660.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_016901 |
| Poaceae | Oryza coarctata | 2 | Oco10G007270, Oco24G004280 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g27880.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G000200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301595, Pt_Chr0306587 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G024690, Chr0G024700, Chr0G024710, Chr14G000310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G773500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG067750, gene_TRIDC3BG076700 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G480600.1, TraesCS3B02G525700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb379580_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53467 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28945 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.513, evm.TU.LG03.514, evm.TU.LG12.1208 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11240 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1352 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9144 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16827 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15299 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.471 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003252 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9565 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18728 |
| Salicaceae | Populus euphratica | 2 | populus_peu15473, populus_peu33116 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628201 |
| Solanaceae | Solanum chilense | 1 | SOLCI004761300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017880 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1881 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2447 |