Basic Information
Locus ID:
COCNU_09G004800
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 46326926 | 46336814 | - | COCNU_09G004800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 106,341.99 Da | 47.20 | 81.25 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 811 | 837 | 0.3 | IPR002885 |
| Pfam | PF00400 | WD domain, G-beta repeat | 328 | 364 | 0.0066 | IPR001680 |
| Pfam | PF01535 | PPR repeat | 638 | 667 | 2.3E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 610 | 633 | 0.26 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 738 | 786 | 5.6E-8 | IPR002885 |
| Pfam | PF00400 | WD domain, G-beta repeat | 47 | 83 | 1.9E-6 | IPR001680 |
| Pfam | PF01535 | PPR repeat | 715 | 737 | 0.45 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 718 | 896 | 1.8E-6 | IPR011990 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 43 | 406 | 6.16E-52 | IPR036322 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 452 | 596 | 7.7E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 597 | 697 | 4.3E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 713 | 918 | 8.1E-40 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 38 | 409 | 7.8E-51 | IPR015943 |
| SMART | SM00320 | WD40_4 | 86 | 128 | 4.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 44 | 83 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 243 | 283 | 58.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 173 | 0.84 | IPR001680 |
| SMART | SM00320 | WD40_4 | 368 | 407 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 365 | 0.38 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 226 | 0.85 | IPR001680 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 638 | 667 | 1.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 742 | 774 | 1.5E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 777 | 807 | 3.7E-4 | IPR002885 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 51 | 83 | 15.019908 | IPR001680 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 535 | 569 | 9.569272 | IPR002885 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 51 | 83 | 12.393768 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 739 | 773 | 12.594591 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 636 | 670 | 10.161182 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 774 | 808 | 9.382931 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 329 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35140.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010935186.1 | DDB1- and CUL4-associated factor 8 [Elaeis guineensis] | 0 |
| Q9STF3 | Pentatricopeptide repeat-containing protein CRR2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IJS4 | Putative Pentatricopeptide repeat-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_09G004800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg26124, jg28907, jg35840, jg37933, jg859 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20905, gene_26705 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009616, Ah037680 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g207400, BVRB_9g213500 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12282, Sbi_jg2447, Sbi_jg47268, Sbi_jg59882 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21536, Seu_jg24141 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018846, GOSA_00022943 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl55514, Sgl60733, Sgl67544 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000019216, gene:ENSEOMG00000037231 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0017760, CQ.Regalona.r1.7BG0002450 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30059250, pistato.v30109220, pistato.v30109830 |
| Apiaceae | Apium graveolens | 2 | Ag11G04270, Ag9G00848 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G014470, COCNU_09G004800 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103708682, gene-LOC103708870, gene-LOC103718921 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1130.V1.1, AsparagusV1_07.377.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G14517, Ftri16G27063, Ftri2G34121, Ftri4G27807 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G45620.2, AT4G35140.1, AT4G38480.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10002508m.g.v1.0, Thhalv10025111m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g15870.v2.2, Sp7g32910.v2.2, Sp7g37300.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g015790.2N, BniB05g003220.2N, BniB08g058500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1771 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1918 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g16200, gene.Cymno10g08000 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0027s00039.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g01930, gene.Thate08g17540 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG08.354, evm.TU.LG09.977 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001719 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb3G17683, Lb4G26257, Lb5G26851, Lb6G31692, Lb6G32419 ... |
| Poaceae | Echinochloa crus-galli | 10 | AH01.3035, AH01.4016, AH06.3008, BH01.3374, BH01.4441 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0115460, gene-QOZ80_2BG0169250 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0055030.1, HORVU.MOREX.r3.4HG0385670.2 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_012389, gene-QYE76_012419, gene-QYE76_036904 ... |
| Poaceae | Oryza coarctata | 4 | Oco05G010380, Oco06G010590, Oco19G009280, Oco20G009170 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g17780.1, LOC_Os06g50880.1, LOC_Os10g39760.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G297500, gene-BS78_01G392600 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0105065, Pt_Chr0106294, Pt_Chr0401784, Pt_Chr0401807 ... |
| Poaceae | Sporobolus alterniflorus | 10 | Chr04G008460, Chr05G000330, Chr06G028460, Chr07G003170 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G351600, Tel4E01G350100, Tel7E01G946900 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG030860, gene_TRIDC1BG036340 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS1A02G204200.2, TraesCS1B02G217800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb013140_P003, Zm00001eb272160_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-3649, nbis-gene-40802, nbis-gene-47026 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g15619, Zma_g33429, Zma_g3857 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG06.996, evm.TU.LG08.1097, evm.TU.LG11.262 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g36040, gene.Posoc06g14560 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2349, evm.TU.Scaffold_2_RagTag.59 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5146, nbisL1-mrna-5219 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7910 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3220, nbisL1-mrna-9323 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.41 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016401 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4598 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22487 |
| Salicaceae | Populus euphratica | 1 | populus_peu08666 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132599357, gene-LOC132600810, gene-LOC132606660 |
| Solanaceae | Solanum chilense | 2 | SOLCI000015800, SOLCI001120600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004896, gene-LOC107008363 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_2167, gene_8855 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0037 |
| Zosteraceae | Zostera marina | 1 | Zosma01g18630.v3.1 |