Basic Information
Locus ID:
COCNU_09G002160
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 35902553 | 35918896 | + | COCNU_09G002160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 37,062.66 Da | 51.52 | 105.68 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 231 | 325 | 5.5E-27 | IPR027486 |
| Pfam | PF01885 | RNA 2'-phosphotransferase, Tpt1 / KptA family | 2 | 171 | 2.3E-13 | IPR002745 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 229 | 326 | 1.01E-29 | IPR036838 |
| SUPERFAMILY | SSF56399 | ADP-ribosylation | 2 | 173 | 1.29E-8 | - |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 213 | 328 | 1.0E-47 | IPR036838 |
| Gene3D | G3DSA:3.20.170.30 | - | 123 | 184 | 6.7E-8 | IPR042081 |
| SMART | SM01403 | Ribosomal_S10_2 | 231 | 325 | 4.0E-39 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 228 | 326 | 3.5E-39 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 253 | 268 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 229 | 242 | 1.4E-12 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 264 | 279 | 1.4E-12 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 286 | 300 | 1.4E-12 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 227 | 326 | 18.439116 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_008813027.1 | 40S ribosomal protein S20-2-like [Phoenix dactylifera] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N743 | Putative 40S ribosomal protein S20-2 OS=Cocos nucifera OX=13894 GN=COCNU_09G002160 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology