Basic Information
Locus ID:
COCNU_09G001680
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 31864575 | 31865741 | + | COCNU_09G001680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 42,805.46 Da | 43.85 | 103.71 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 1 | 56 | 3.8E-12 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 57 | 8.65E-17 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 91 | 370 | 1.81E-12 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 69 | 2.9E-18 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 75 | 374 | 2.4E-12 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 1 | 55 | 5.4E-14 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 62 | 25.238548 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010934556.1 | E3 ubiquitin-protein ligase PUB23-like [Elaeis guineensis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N6X5 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_09G001680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology