Basic Information
Locus ID:
COCNU_09G001050
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 23791828 | 23803060 | + | COCNU_09G001050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 51,818.21 Da | 37.15 | 98.06 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 311 | 378 | 9.7E-22 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 25 | 206 | 6.7E-82 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 379 | 435 | 5.1E-5 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 26 | 377 | 5.66E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 51 | 220 | 2.7E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 296 | 445 | 1.6E-29 | IPR027417 |
| SMART | SM00382 | AAA_5 | 75 | 224 | 3.4E-5 | IPR003593 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 53 | 206 | 30.823521 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 311 | 382 | 25.983276 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 323 | 331 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 177 | 206 | 4.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 353 | 382 | 4.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 105 | 134 | 4.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 407 | 424 | 4.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 139 | 168 | 4.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 320 | 348 | 4.7E-75 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 475 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_010909692.1 | DNA repair protein recA homolog 3, mitochondrial isoform X1 [Elaeis guineensis] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0IJ29 | RECA_2 domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_09G001050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology