Basic Information
Locus ID:
COCNU_09G001000
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
CDPK-related protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 21390044 | 21421232 | - | COCNU_09G001000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.01 | 32,227.56 Da | 46.75 | 68.92 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 140 | 198 | 2.75E-7 | IPR011009 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 186 | 275 | 1.69E-18 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 168 | 288 | 2.2E-25 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 190 | 279 | 9.162528 | IPR001584 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 156 | 182 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 67 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46700.1 | CDPK-related kinase 3. | 0 |
| RefSeq | XP_029117123.1 | CDPK-related kinase 3 isoform X2 [Elaeis guineensis] | 0 |
| Q9ZUZ2 | CDPK-related kinase 3 OS=Arabidopsis thaliana OX=3702 GN=CRK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IIU4 | Putative CDPK-related protein kinase OS=Cocos nucifera OX=13894 GN=COCNU_09G001000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026154 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000031586 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G001000 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr12G025550, Chr20G005450 |
| Poaceae | Thinopyrum elongatum | 6 | Tel3E01G186100, Tel3E01G532600, Tel3E01G837000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG076670 |
| Poaceae | Zea mays | 3 | Zm00001eb092830_P001, Zm00001eb180840_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-54473, nbis-gene-9572 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12207 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5699 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011417 |
| Salicaceae | Populus euphratica | 1 | populus_peu14330 |