Basic Information
Locus ID:
COCNU_09G000290
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 7145705 | 7161417 | + | COCNU_09G000290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 130,914.06 Da | 38.55 | 82.30 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 406 | 443 | 2.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 848 | 875 | 0.23 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 297 | 407 | 1.7E-6 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 371 | 875 | 5.89E-35 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 284 | 474 | 8.0E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 700 | 978 | 8.5E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 479 | 608 | 2.4E-9 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 296 | 335 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 760 | 797 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 486 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 800 | 840 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 443 | 5.6E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.9E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 506 | 546 | 7.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 843 | 879 | 0.61 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 409 | 452 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.260975 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 430 | 444 | - | IPR019775 |
| Coils | Coil | Coil | 1069 | 1148 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_010943653.1 | protein TOPLESS-RELATED PROTEIN 2 isoform X2 [Elaeis guineensis] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IJK1 | Protein TPR2 OS=Cocos nucifera OX=13894 GN=COCNU_09G000290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology