Basic Information
Locus ID:
COCNU_08G011640
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 56930172 | 56945591 | + | COCNU_08G011640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 83,463.94 Da | 46.74 | 71.95 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 484 | 769 | 6.00584E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 485 | 520 | 0.055 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 651 | 686 | 0.0059 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 528 | 562 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 569 | 606 | 2.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 482 | 769 | 2.04E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 618 | 769 | 1.0E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 470 | 617 | 1.7E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 481 | 520 | 5.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 730 | 769 | 0.026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 566 | 606 | 2.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 689 | 728 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 523 | 562 | 9.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 648 | 686 | 1.9E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 737 | 769 | 11.629227 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 737 | 769 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 488 | 529 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 530 | 562 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 530 | 562 | 10.838322 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 573 | 608 | 8.729241 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 573 | 615 | 10.541869 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 380 | - | - |
| Coils | Coil | Coil | 47 | 67 | - | - |
| Coils | Coil | Coil | 329 | 349 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_010940734.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X4 [Elaeis guineensis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IIJ7 | Transcriptional corepressor LEUNIG-like protein OS=Cocos nucifera OX=13894 GN=COCNU_08G011640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology