Basic Information
Locus ID:
COCNU_08G011140
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 55749698 | 55754166 | + | COCNU_08G011140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 68,474.56 Da | 41.38 | 98.20 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 262 | 304 | 2.93309E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 426 | 464 | 2.3E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 385 | 423 | 8.7E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 467 | 505 | 8.5E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 258 | 328 | 4.4E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 549 | 587 | 2.7E-4 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 333 | 8.84E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 341 | 631 | 3.61E-55 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 20 | 132 | 3.3E-11 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 447 | 534 | 1.4E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 331 | 9.8E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 347 | 446 | 1.5E-25 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 535 | 634 | 6.9E-14 | IPR011989 |
| SMART | SM00185 | arm_5 | 507 | 547 | 20.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 384 | 424 | 1.4E-5 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 261 | 324 | 9.7E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 548 | 588 | 6.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 425 | 465 | 0.69 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 0.0076 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 257 | 331 | 43.637604 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 13.7374 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| Coils | Coil | Coil | 137 | 157 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_010940632.1 | U-box domain-containing protein 12 [Elaeis guineensis] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N659 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_08G011140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology