Basic Information
Locus ID:
COCNU_08G010470
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 54317288 | 54326036 | - | COCNU_08G010470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 93,287.35 Da | 73.13 | 64.65 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 757 | 797 | 1.71153E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 755 | 802 | 6.0E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 757 | 803 | 8.39E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 736 | 808 | 2.8E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 758 | 797 | 10.748424 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 192 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010940495.1 | uncharacterized protein LOC105059049 isoform X1 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0IK12 | Zinc finger CCCH domain-containing protein 13 OS=Cocos nucifera OX=13894 GN=COCNU_08G010470 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology