Basic Information
Locus ID:
COCNU_08G010450
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 54262013 | 54309959 | + | COCNU_08G010450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 66,717.64 Da | 48.55 | 72.15 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00230 | Major intrinsic protein | 492 | 596 | 5.6E-35 | IPR000425 |
| SUPERFAMILY | SSF81338 | Aquaporin-like | 499 | 601 | 6.8E-29 | IPR023271 |
| Gene3D | G3DSA:1.20.1080.10 | Glycerol uptake facilitator protein. | 456 | 607 | 5.0E-38 | IPR023271 |
| PRINTS | PR00783 | Major intrinsic protein family signature | 503 | 521 | 1.3E-32 | IPR000425 |
| PRINTS | PR00783 | Major intrinsic protein family signature | 539 | 561 | 1.3E-32 | IPR000425 |
| PRINTS | PR00783 | Major intrinsic protein family signature | 579 | 599 | 1.3E-32 | IPR000425 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 198 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01620.2 | plasma membrane intrinsic protein 1C. a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. | 0 |
| RefSeq | XP_038971296.1 | uncharacterized protein LOC103698622 isoform X2 [Phoenix dactylifera] | 0 |
| S5ZH89 | Aquaporin PIP1-1 OS=Musa acuminata OX=4641 GN=PIP1-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IIM2 | INCENP_ARK-bind domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_08G010450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2285, jg33969 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16141 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018861 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g055090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38403, Sbi_jg6510 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15407 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006499 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01956, Sgl07112 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000443, gene:ENSEOMG00000028832 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0003060, CQ.Regalona.r1.3BG0003320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30182980 |
| Apiaceae | Apium graveolens | 2 | Ag10G02606, Ag2G02026 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G010450, COCNU_09G007910 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698622, gene-LOC103705525 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2103.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G08008 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024755m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g082020.2N, BniB05g011720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1455 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1548 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g01110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g07070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11787, nbisL1-mrna-12618 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2747 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010370, Pov_00040982 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G03961, Lb1G03962, Lb1G04004 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.1126, BH03.1289, BH09.419, CH03.1449, CH03.91 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0331730.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020491, gene-QYE76_040056 |
| Poaceae | Oryza coarctata | 1 | Oco18G012220 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g39660.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G134800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0700637 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G008290, Chr21G008470 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G013100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG047340, gene_TRIDC4BG001310 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G310700.1, TraesCS4B02G003500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb095880_P002, Zm00001eb224460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31801 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32022 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1417, evm.TU.LG11.1643, evm.TU.LG14.699 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g05810 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.1409, evm.TU.Scaffold_4_RagTag.109 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12700, nbisL1-mrna-29232 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7250 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2170 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.68, evm.TU.utg000010l.386 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000070, Maker00009070 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1089, nbisL1-mrna-2346 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20576, nbisL1-mrna-6291 |
| Salicaceae | Populus euphratica | 2 | populus_peu29301, populus_peu30662 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631933, gene-LOC132639318 |
| Solanaceae | Solanum chilense | 2 | SOLCI002473000, SOLCI004626000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012418 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.6434_chr04_+, gene_10808 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G2368, TC08G1588 |
| Zosteraceae | Zostera marina | 2 | Zosma01g24230.v3.1, Zosma03g26760.v3.1 |