Basic Information
Locus ID:
COCNU_08G010440
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 54250440 | 54258222 | + | COCNU_08G010440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 93,211.09 Da | 44.31 | 86.00 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 48 | 202 | 3.2245E-44 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 763 | 804 | 3.46391E-24 | - |
| Pfam | PF04564 | U-box domain | 759 | 828 | 8.5E-20 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 472 | 721 | 9.6E-42 | IPR000719 |
| SUPERFAMILY | SSF57850 | RING/U-box | 751 | 828 | 4.15E-25 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 446 | 724 | 7.55E-68 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 74 | 166 | 1.26E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 542 | 741 | 8.3E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 453 | 541 | 5.9E-28 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 38 | 167 | 1.0E-6 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 757 | 828 | 8.1E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 762 | 825 | 1.8E-29 | IPR003613 |
| SMART | SM00220 | serkin_6 | 469 | 735 | 3.2E-33 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 758 | 828 | 40.338158 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 469 | 735 | 33.813488 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 475 | 496 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 587 | 599 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 443 | - | - |
| Coils | Coil | Coil | 350 | 391 | - | - |
| Coils | Coil | Coil | 298 | 342 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010940488.1 | U-box domain-containing protein 33 [Elaeis guineensis] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0IIB7 | U-box domain-containing protein 33 OS=Cocos nucifera OX=13894 GN=COCNU_08G010440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology