Basic Information
Locus ID:
COCNU_08G007890
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 48842752 | 48879746 | - | COCNU_08G007890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 27,429.34 Da | 55.99 | 88.54 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 76 | 3.29057E-39 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 4.3E-27 | IPR002100 |
| Pfam | PF01486 | K-box region | 84 | 171 | 4.2E-26 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 75 | 3.01E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 97 | 2.3E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 4.0E-40 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 181 | 14.6944 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.819073 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.5E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.5E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.5E-30 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 239 | - | - |
| Coils | Coil | Coil | 74 | 115 | - | - |
| Coils | Coil | Coil | 137 | 171 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.2 | - | 0 |
| RefSeq | XP_010941167.1 | MADS-box protein SOC1 isoform X1 [Elaeis guineensis] | 0 |
| O64645 | MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IHV7 | MADS-box protein SOC1 OS=Cocos nucifera OX=13894 GN=COCNU_08G007890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology