Basic Information
Locus ID:
COCNU_08G006600
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 45054026 | 45062897 | + | COCNU_08G006600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 30,018.27 Da | 43.85 | 70.46 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 202 | 268 | 8.77206E-31 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 204 | 268 | 5.8E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 176 | 269 | 5.43E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 197 | 276 | 3.1E-15 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 203 | 276 | 7.1E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 202 | 268 | 10.087302 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.3 | - | 0 |
| RefSeq | XP_019711090.1 | LOW QUALITY PROTEIN: RNA-binding protein 1-like [Elaeis guineensis] | 0 |
| Q6JB11 | Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IHH0 | RRM domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_08G006600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology