halophFGD

Basic Information

Locus ID: COCNU_08G006490

Species & Taxonomic ID: Cocos nucifera & 13894

Genome Assembly: GCA_008124465.1

Description: E3 ubiquitin-protein ligase XBOS33

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	44790337	44794688	+	COCNU_08G006490

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.39	22,700.60 Da	22.98	99.49	0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00023	Ankyrin repeat	133	161	5.0E-5	IPR002110
Pfam	PF12796	Ankyrin repeats (3 copies)	16	99	2.1E-8	IPR020683
SUPERFAMILY	SSF48403	Ankyrin repeat	14	162	7.21E-20	IPR036770
Gene3D	G3DSA:1.25.40.20	-	6	181	4.8E-24	IPR036770
SMART	SM00248	ANK_2a	132	161	6.7E-5	IPR002110
SMART	SM00248	ANK_2a	67	99	8.1	IPR002110
ProSiteProfiles	PS50088	Ankyrin repeat profile.	67	102	8.54937	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	132	160	10.842607	-
ProSiteProfiles	PS50088	Ankyrin repeat profile.	132	164	11.59431	IPR002110

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K19044 (E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G07270.1	XB3 ortholog 3 in Arabidopsis thaliana.
RefSeq	XP_010940876.1	probable E3 ubiquitin-protein ligase XBOS33 isoform X3 [Elaeis guineensis]
Swiss-Prot	Q337A0	Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1
TrEMBL	A0A8K0N5S3	Putative E3 ubiquitin-protein ligase XBOS33 OS=Cocos nucifera OX=13894 GN=COCNU_08G006490 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg14018, jg15641, jg2320, jg33121, jg33991
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10845, gene_16110
Amaranthaceae	Atriplex hortensis	4	Ah014845, Ah018937, Ah020886, Ah020888
Amaranthaceae	Beta vulgaris	1	BVRB_8g192200
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15542, Sbi_jg24823, Sbi_jg56365, Sbi_jg8691
Amaranthaceae	Salicornia europaea	2	Seu_jg19917, Seu_jg26804
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006565, GOSA_00022232
Amaranthaceae	Suaeda glauca	4	Sgl02028, Sgl07181, Sgl42510, Sgl47240
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003949, gene:ENSEOMG00000009536 ... gene:ENSEOMG00000030442, gene:ENSEOMG00000035201, gene:ENSEOMG00000042441, gene:ENSEOMG00000044404
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0002520, CQ.Regalona.r1.3BG0002650 ... CQ.Regalona.r1.5BG0017860, CQ.Regalona.r1.8AG0017670, CQ.Regalona.r1.8BG0018750
Anacardiaceae	Pistacia vera	2	pistato.v30182440, pistato.v30264420
Apiaceae	Apium graveolens	5	Ag10G00070, Ag10G02628, Ag10G02629, Ag10G02776, Ag2G01985
Arecaceae	Cocos nucifera	6	COCNU_01G004360, COCNU_07G006970, COCNU_08G006480 ... COCNU_08G006490, COCNU_10G005190, COCNU_11G009130
Arecaceae	Phoenix dactylifera	6	gene-LOC103699530, gene-LOC103707121, gene-LOC103710468 ... gene-LOC103711156, gene-LOC103714157, gene-LOC103716708
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.2555.V1.1, AsparagusV1_08.401.V1.1 ... AsparagusV1_10.1084.V1.1
Asteraceae	Flaveria trinervia	4	Ftri3G08493, Ftri4G01708, Ftri4G32617, Ftri8G02497
Brassicaceae	Arabidopsis thaliana	2	AT5G07270.1, AT5G57740.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10013287m.g.v1.0, Thhalv10013312m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g19420.v2.2, Sp6g35620.v2.2
Brassicaceae	Brassica nigra	4	BniB02g037110.2N, BniB02g053620.2N, BniB05g028470.2N ... BniB05g037360.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2098, Ceq03G1173, Ceq05G0537
Casuarinaceae	Casuarina glauca	3	Cgl02G2171, Cgl03G1280, Cgl05G0569
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g05030, gene.Cymno05g08760, gene.Cymno14g04760
Dunaliellaceae	Dunaliella salina	3	Dusal.0060s00020.v1.0, Dusal.0120s00020.v1.0 ... Dusal.0250s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g12330, gene.Thate04g24770, gene.Thate07g07340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11810
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2698, evm.TU.LG07.407
Plantaginaceae	Plantago ovata	3	Pov_00000667, Pov_00015626, Pov_00040925
Plumbaginaceae	Limonium bicolor	1	Lb4G24381
Poaceae	Echinochloa crus-galli	12	AH01.3149, AH06.482, AH07.3747, AH08.906, BH01.3508 ... BH06.165, BH07.1940, BH07.3571, CH06.154, CH07.3636, CH08.1047, CH09.292
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0114220, gene-QOZ80_2AG0148590 ... gene-QOZ80_2BG0168020, gene-QOZ80_2BG0203970, gene-QOZ80_6AG0507080, gene-QOZ80_6BG0459140, gene-QOZ80_8AG0624260, gene-QOZ80_8BG0651980
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0051110.1, HORVU.MOREX.r3.6HG0623070.1 ... HORVU.MOREX.r3.7HG0643200.1, HORVU.MOREX.r3.7HG0658700.1
Poaceae	Lolium multiflorum	6	gene-QYE76_012144, gene-QYE76_016444, gene-QYE76_026086 ... gene-QYE76_026289, gene-QYE76_032299, gene-QYE76_032308
Poaceae	Oryza coarctata	8	Oco03G023930, Oco04G024470, Oco11G001310, Oco12G001220 ... Oco15G005170, Oco16G004890, Oco19G008370, Oco20G008220
Poaceae	Oryza sativa	4	LOC_Os02g54860.1, LOC_Os06g03800.1, LOC_Os08g15840.5 ... LOC_Os10g37730.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G309600, gene-BS78_01G359000 ... gene-BS78_07G100700, gene-BS78_10G021200
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0203812, Pt_Chr0303694, Pt_Chr0401920, Pt_Chr0402814 ... Pt_Chr0503012, Pt_Chr0503018
Poaceae	Sporobolus alterniflorus	14	Chr05G014770, Chr05G017530, Chr06G000630, Chr06G029210 ... Chr09G003030, Chr09G017950, Chr11G024010, Chr13G002140, Chr13G021810, Chr15G001870, Chr15G020400, Chr16G003470, Chr17G003170, Chr29G008820
Poaceae	Thinopyrum elongatum	5	Tel1E01G324900, Tel2E01G982100, Tel6E01G626500 ... Tel7E01G130600, Tel7E01G296500
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG028640, gene_TRIDC1BG032970 ... gene_TRIDC6AG052980, gene_TRIDC6BG061580, gene_TRIDC7AG006520, gene_TRIDC7AG017780, gene_TRIDC7BG007140
Poaceae	Triticum aestivum	12	TraesCS1A02G189100.1, TraesCS1B02G196800.1 ... TraesCS1D02G187300.1, TraesCS4A02G429100.1, TraesCS6A02G352300.1, TraesCS6B02G385200.1, TraesCS6D02G335000.2, TraesCS7A02G060700.1, TraesCS7A02G145900.1, TraesCS7B02G048300.1, TraesCS7D02G055500.1, TraesCS7D02G147400.1
Poaceae	Zea mays	5	Zm00001eb021320_P001, Zm00001eb178040_P001 ... Zm00001eb192640_P001, Zm00001eb269490_P002, Zm00001eb378520_P001
Poaceae	Zoysia japonica	6	nbis-gene-34432, nbis-gene-36123, nbis-gene-44701 ... nbis-gene-51169, nbis-gene-51170, nbis-gene-8460
Poaceae	Zoysia macrostachya	5	Zma_g12784, Zma_g14600, Zma_g15541, Zma_g22715, Zma_g31271
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2654, evm.TU.LG11.1603, evm.TU.LG16.1442 ... evm.TU.LG23.879
Posidoniaceae	Posidonia oceanica	10	gene.Posoc01g19400, gene.Posoc01g36140, gene.Posoc02g03990 ... gene.Posoc02g24810, gene.Posoc03g02670, gene.Posoc06g11590, gene.Posoc06g11610, gene.Posoc06g16450, gene.Posoc07g12900, gene.Posoc09g02980
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.211, evm.TU.Scaffold_4_RagTag.147 ... evm.TU.Scaffold_11_RagTag.1356
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12655, nbisL1-mrna-13366, nbisL1-mrna-29198
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15068, nbisL1-mrna-16283, nbisL1-mrna-7227
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12926, nbisL1-mrna-16639, nbisL1-mrna-2137
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.89, evm.TU.utg000010l.353 ... evm.TU.utg000033l.142
Rhizophoraceae	Kandelia obovata	4	Maker00000037, Maker00008459, Maker00008595, Maker00014619
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1060, nbisL1-mrna-16627, nbisL1-mrna-2368
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14598, nbisL1-mrna-20614, nbisL1-mrna-6257
Salicaceae	Populus euphratica	3	populus_peu05515, populus_peu29257, populus_peu30619
Solanaceae	Lycium barbarum	2	gene-LOC132602871, gene-LOC132631864
Solanaceae	Solanum chilense	1	SOLCI006529100
Solanaceae	Solanum pennellii	2	gene-LOC107015481, gene-LOC107026410
Tamaricaceae	Reaumuria soongarica	2	STRG.18817_chr07_-, gene_4140
Tamaricaceae	Tamarix chinensis	3	TC06G1662, TC12G0417, TC12G0418
Zosteraceae	Zostera marina	3	Zosma01g04350.v3.1, Zosma01g35410.v3.1, Zosma03g12500.v3.1