Basic Information
Locus ID:
COCNU_08G005590
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 40619362 | 40619970 | - | COCNU_08G005590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.00 | 23,492.77 Da | 56.07 | 78.76 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 20 | 184 | 1.6E-37 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 18 | 188 | 1.02E-37 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 161 | 1.1E-45 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 63 | 78 | 7.6E-11 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 151 | 171 | 7.6E-11 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 121 | 135 | 7.6E-11 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 19 | 32 | 7.6E-11 | IPR017989 |
| Coils | Coil | Coil | 114 | 134 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010942712.2 | 60 kDa jasmonate-induced protein [Elaeis guineensis] | 0 |
| P28590 | Abrin-c OS=Abrus precatorius OX=3816 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N5P7 | rRNA N-glycosylase OS=Cocos nucifera OX=13894 GN=COCNU_08G005590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology