Basic Information
Locus ID:
COCNU_08G004260
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 36057500 | 36060924 | - | COCNU_08G004260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 80,559.26 Da | 40.04 | 88.75 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 381 | 657 | 9.6846E-86 | - |
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 43 | 296 | 1.88923E-81 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 43 | 300 | 4.4E-62 | IPR001220 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 379 | 595 | 1.8E-46 | IPR001245 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 43 | 297 | 1.77E-57 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 356 | 654 | 6.2E-74 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 457 | 661 | 1.5E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 349 | 456 | 2.4E-31 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 41 | 305 | 1.0E-68 | - |
| SMART | SM00220 | serkin_6 | 375 | 659 | 5.2E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 375 | 664 | 36.258671 | IPR000719 |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 180 | 186 | - | IPR019825 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 502 | 514 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 381 | 409 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06740.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_010932159.1 | probable L-type lectin-domain containing receptor kinase S.5 [Elaeis guineensis] | 0 |
| Q9FG33 | Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana OX=3702 GN=LECRKS5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N637 | Putative L-type lectin-domain containing receptor kinase S.5 OS=Cocos nucifera OX=13894 GN=COCNU_08G004260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg19944, jg20153, jg30962, jg30963, jg30965 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19106, gene_8236 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah021472, Ah021473, Ah021474, Ah021482, Ah026809 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g139600 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13770, Sbi_jg52144 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9693 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017505 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl02594, Sgl02595, Sgl07753, Sgl07754, Sgl33298, Sgl38524 ... |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001919, gene:ENSEOMG00000002512 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.3AG0019500, CQ.Regalona.r1.3AG0019510 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30105570, pistato.v30212580 |
| Apiaceae | Apium graveolens | 2 | Ag3G01472, Ag3G01591 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G004260, COCNU_08G004270 |
| Arecaceae | Phoenix dactylifera | 6 | gene-LOC103713890, gene-LOC103713892, gene-LOC120103905 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G22690 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012919m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g36110.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g054040.2N |
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq04G0236, Ceq04G0760, Ceq04G1173, Ceq06G0006, Ceq07G1913 |
| Casuarinaceae | Casuarina glauca | 5 | Cgl04G0329, Cgl04G0871, Cgl04G1332, Cgl06G0008, Cgl07G2084 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g08200 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate01g31350, gene.Thate01g31370, gene.Thate05g06560 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11049, nbisL1-mrna-8491 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2914, evm.TU.LG08.471 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020290 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06086, Lb1G06090, Lb1G06091 |
| Poaceae | Echinochloa crus-galli | 14 | AH07.3199, AH08.2054, AH08.2056, AH09.2079, BH06.2677 ... |
| Poaceae | Eleusine coracana subsp. coracana | 9 | gene-QOZ80_2AG0143160, gene-QOZ80_2BG0198530 ... |
| Poaceae | Hordeum vulgare | 7 | HORVU.MOREX.r3.2HG0196070.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_001924, gene-QYE76_018702, gene-QYE76_024733 ... |
| Poaceae | Oryza coarctata | 10 | Oco03G019660, Oco04G020440, Oco04G020450, Oco07G014100 ... |
| Poaceae | Oryza sativa | 9 | LOC_Os02g48200.1, LOC_Os02g48210.1, LOC_Os04g01874.1 ... |
| Poaceae | Paspalum vaginatum | 7 | gene-BS78_02G067900, gene-BS78_04G252600 ... |
| Poaceae | Puccinellia tenuiflora | 11 | Pt_Chr0203638, Pt_Chr0206891, Pt_Chr0301606, Pt_Chr0306592 ... |
| Poaceae | Sporobolus alterniflorus | 10 | Chr06G003820, Chr09G021870, Chr09G021880, Chr15G005270 ... |
| Poaceae | Thinopyrum elongatum | 10 | Tel2E01G769200, Tel2E01G769300, Tel2E01G772800 ... |
| Poaceae | Triticum dicoccoides | 19 | gene_TRIDC2AG065050, gene_TRIDC2AG065140 ... |
| Poaceae | Triticum aestivum | 34 | TraesCS2A02G455600.1.cds1, TraesCS2A02G456400.1.cds1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb072760_P001, Zm00001eb086180_P001 ... |
| Poaceae | Zoysia japonica | 9 | nbis-gene-17434, nbis-gene-17436, nbis-gene-22050 ... |
| Poaceae | Zoysia macrostachya | 9 | Zma_g14267, Zma_g17011, Zma_g21856, Zma_g21857, Zma_g23246 ... |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG02.2733, evm.TU.LG07.2071, evm.TU.LG07.269 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g11760 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.554, evm.TU.Scaffold_1_RagTag.1248 |
| Rhizophoraceae | Carallia pectinifolia | 9 | nbisL1-mrna-16923, nbisL1-mrna-17735, nbisL1-mrna-17799 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13287, nbisL1-mrna-7864 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8193 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000016l.140, evm.TU.utg000007l.52 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018443 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-13403, nbisL1-mrna-19766, nbisL1-mrna-23331 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3864 |
| Salicaceae | Populus euphratica | 4 | populus_peu08389, populus_peu12312, populus_peu17291 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132607378, gene-LOC132617698, gene-LOC132621601 |
| Solanaceae | Solanum chilense | 3 | SOLCI002265000, SOLCI002698700, SOLCI002815100 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107002271, gene-LOC107005676, gene-LOC107011477 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16894, gene_3074 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2449, TC12G0889 |