Basic Information
Locus ID:
COCNU_08G003950
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 35215847 | 35217533 | - | COCNU_08G003950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 30,633.17 Da | 40.66 | 89.19 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 161 | 246 | 5.1E-8 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 16 | 139 | 4.2E-9 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 5 | 267 | 1.52E-85 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 270 | 2.4E-95 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_010932239.1 | probable CCR4-associated factor 1 homolog 7 [Elaeis guineensis] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0N657 | poly(A)-specific ribonuclease OS=Cocos nucifera OX=13894 GN=COCNU_08G003950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology