Basic Information
Locus ID:
COCNU_08G003370
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 33776768 | 33782930 | - | COCNU_08G003370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 144,749.30 Da | 37.25 | 105.85 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 717 | 1004 | 4.68022E-72 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1027 | 1254 | 5.13554E-118 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 414 | 618 | 2.11384E-102 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 102 | 389 | 1.45582E-85 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 726 | 959 | 6.0E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 440 | 570 | 8.5E-14 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 101 | 368 | 1.5E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1046 | 1201 | 3.0E-29 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 93 | 394 | 5.23E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 437 | 631 | 5.33E-48 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1023 | 1261 | 1.78E-61 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 717 | 1011 | 5.49E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 679 | 1010 | 4.3E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 428 | 667 | 4.4E-62 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 75 | 399 | 1.4E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1013 | 1272 | 7.2E-77 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1055 | 1255 | 3.5E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 444 | 618 | 2.2E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 101 | 381 | 31.015638 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 414 | 641 | 19.301178 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 719 | 957 | 33.118584 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1029 | 1270 | 16.473394 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 543 | 557 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_008777748.2 | putative ABC transporter C family member 15 [Phoenix dactylifera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IHF1 | ABC transporter C family member 3 OS=Cocos nucifera OX=13894 GN=COCNU_08G003370 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology