Basic Information
Locus ID:
COCNU_08G003330
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
bromodomain domain containing protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 33587123 | 33609162 | + | COCNU_08G003330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 120,323.88 Da | 48.34 | 78.97 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 129 | 381 | 1.87496E-105 | - |
| CDD | cd05506 | Bromo_plant1 | 541 | 639 | 9.29104E-60 | IPR037377 |
| Pfam | PF00439 | Bromodomain | 545 | 628 | 9.7E-19 | IPR001487 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 126 | 381 | 2.0E-63 | IPR001245 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 57 | 92 | 8.7E-5 | - |
| Pfam | PF17035 | Bromodomain extra-terminal - transcription regulation | 687 | 748 | 3.7E-13 | IPR027353 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 114 | 387 | 1.43E-78 | IPR011009 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 25 | 92 | 3.58E-13 | IPR036770 |
| SUPERFAMILY | SSF47370 | Bromodomain | 525 | 647 | 1.23E-37 | IPR036427 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 107 | 202 | 6.2E-24 | - |
| Gene3D | G3DSA:1.20.920.10 | - | 534 | 659 | 4.4E-40 | IPR036427 |
| Gene3D | G3DSA:1.25.40.20 | - | 2 | 99 | 2.6E-16 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 203 | 403 | 3.7E-54 | - |
| Gene3D | G3DSA:1.20.1270.220 | - | 683 | 757 | 3.0E-8 | IPR038336 |
| SMART | SM00297 | bromo_6 | 534 | 644 | 6.4E-39 | IPR001487 |
| SMART | SM00220 | serkin_6 | 123 | 390 | 1.3E-65 | IPR000719 |
| SMART | SM00248 | ANK_2a | 56 | 85 | 9.0E-5 | IPR002110 |
| ProSiteProfiles | PS50014 | Bromodomain profile. | 553 | 625 | 19.3988 | IPR001487 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 56 | 88 | 12.407959 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 56 | 88 | 13.78453 | IPR002110 |
| ProSiteProfiles | PS51525 | NET domain profile. | 678 | 758 | 13.288815 | IPR027353 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 123 | 384 | 47.14185 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 129 | 150 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 242 | 254 | - | IPR008271 |
| PRINTS | PR00503 | Bromodomain signature | 572 | 588 | 1.6E-17 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 556 | 569 | 1.6E-17 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 606 | 625 | 1.6E-17 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 588 | 606 | 1.6E-17 | IPR001487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1060 | 1082 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 922 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 857 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 906 | 920 | - | - |
| Coils | Coil | Coil | 954 | 974 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14000.1 | VH1-interacting kinase. Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling. | 0 |
| RefSeq | XP_010932309.1 | transcription factor GTE9 isoform X1 [Elaeis guineensis] | 0 |
| Q9XI87 | Serine/threonine-protein kinase VIK OS=Arabidopsis thaliana OX=3702 GN=VIK PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N6H8 | Putative Transcription factor GTE9 OS=Cocos nucifera OX=13894 GN=COCNU_08G003330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5397, jg7124, jg9309 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3813 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013136 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g153360 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg42975, Sbi_jg45582, Sbi_jg45588 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11433 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002103, GOSA_00002104 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35661, Sgl41000 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003740, gene:ENSEOMG00000015686 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0000640, CQ.Regalona.r1.6BG0000590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30227450 |
| Apiaceae | Apium graveolens | 3 | Ag1G01440, Ag6G00417, Ag8G01379 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G005520, COCNU_08G003330 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714502, gene-LOC103721231 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1665.V1.1, AsparagusV1_03.1756.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G05681, Ftri9G22492 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G14000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007646m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g12360.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g008910.2N, BniB06g038890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0179 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0181 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g03520, gene.Cymno04g10300, gene.Cymno05g11500 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0019s00022.v1.0, Dusal.0540s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08140 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11159 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.306 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027086 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32617 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3803, BH03.4086, CH03.4366 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0578550, gene-QOZ80_7BG0609810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0122010.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039640 |
| Poaceae | Oryza coarctata | 2 | Oco13G013550, Oco14G014330 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g43900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G361400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304766 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G001620, Chr24G014450, Chr27G015680, Chr28G012470 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G309100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG019540, gene_TRIDC2BG023370 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G155500.1, TraesCS2B02G180500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb328410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33050 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5627 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.217, evm.TU.LG12.1489, evm.TU.LG13.428 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g24540, gene.Posoc02g27950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-22928, nbisL1-mrna-26768 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1275 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14917 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.274 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006572 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7187 |
| Rhizophoraceae | Rhizophora mangle | 8 | nbisL1-mrna-14961, nbisL1-mrna-23325, nbisL1-mrna-23979 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu06755, populus_peu20645, populus_peu20646 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642036 |
| Solanaceae | Solanum chilense | 1 | SOLCI002408400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009053, gene-LOC107020796 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.14111_chr05_-, gene_49 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3030, TC03G0793 |
| Zosteraceae | Zostera marina | 2 | Zosma02g19680.v3.1, Zosma04g04750.v3.1 |