Basic Information
Locus ID:
COCNU_08G000790
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 19723670 | 19751676 | + | COCNU_08G000790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 182,689.81 Da | 43.48 | 110.22 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 265 | 329 | 1.0E-11 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 387 | 1031 | 2.56E-23 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 330 | 9.71E-17 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 1296 | 1640 | 2.37E-33 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 762 | 1409 | 6.44E-33 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 851 | 1058 | 1.4E-15 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 340 | 527 | 9.2E-16 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 1059 | 1190 | 5.1E-7 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 242 | 337 | 1.4E-18 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 1191 | 1380 | 3.7E-18 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 663 | 850 | 3.8E-18 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 528 | 662 | 4.9E-7 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 1381 | 1653 | 3.8E-25 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 123 | 6.1E-8 | IPR036537 |
| SMART | SM00185 | arm_5 | 1233 | 1275 | 45.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 264 | 327 | 1.4E-16 | IPR003613 |
| SMART | SM00185 | arm_5 | 365 | 406 | 17.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 1530 | 1570 | 4.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 1413 | 1453 | 12.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 408 | 447 | 7.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 1371 | 1411 | 230.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 703 | 745 | 45.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 663 | 702 | 130.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 1455 | 1496 | 2.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 841 | 881 | 230.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 1193 | 1232 | 130.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 938 | 977 | 48.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 883 | 923 | 12.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 260 | 334 | 17.949692 | IPR003613 |
| ProSiteProfiles | PS51153 | RPW8 domain profile. | 1 | 154 | 8.541641 | IPR008808 |
| Coils | Coil | Coil | 127 | 154 | - | - |
| Coils | Coil | Coil | 194 | 217 | - | - |
| Coils | Coil | Coil | 69 | 89 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019709017.1 | U-box domain-containing protein 44 [Elaeis guineensis] | 0 |
| C6L7U1 | Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0N593 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_08G000790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5773 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235850 |
| Apiaceae | Apium graveolens | 1 | Ag5G02549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711617 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA05963 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0368 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.999 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2184 |
| Salicaceae | Populus euphratica | 1 | populus_peu21467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609553 |
| Solanaceae | Solanum chilense | 1 | SOLCI003509000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031387 |