Basic Information
Locus ID:
COCNU_08G000240
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 8712378 | 8744002 | - | COCNU_08G000240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 162,461.45 Da | 42.77 | 76.45 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 554 | 857 | 6.01152E-141 | - |
| CDD | cd00121 | MATH | 53 | 176 | 1.12275E-39 | IPR002083 |
| CDD | cd00121 | MATH | 413 | 536 | 1.12275E-39 | IPR002083 |
| Pfam | PF00917 | MATH domain | 58 | 178 | 2.5E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 556 | 784 | 1.7E-27 | IPR001394 |
| Pfam | PF00917 | MATH domain | 418 | 538 | 2.5E-19 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 956 | 1208 | 4.0E-77 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 1218 | 1384 | 2.9E-46 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 196 | 297 | 3.3E-18 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 191 | 370 | 3.73E-50 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 49 | 184 | 2.78E-41 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 551 | 882 | 1.69E-77 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 409 | 544 | 2.78E-41 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 50 | 192 | 2.4E-52 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 1016 | 1133 | 2.8E-45 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1134 | 1231 | 8.4E-29 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 193 | 378 | 1.2E-47 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 553 | 856 | 2.4E-68 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 410 | 552 | 2.4E-52 | IPR008974 |
| SMART | SM00061 | math_3 | 53 | 157 | 5.7E-23 | IPR002083 |
| SMART | SM00061 | math_3 | 413 | 517 | 5.7E-23 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 176 | 39.26123 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 556 | 855 | 26.784941 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 411 | 536 | 39.26123 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 196 | 503 | 19.117247 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 557 | 572 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 197 | 212 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 51 | - | - |
| Coils | Coil | Coil | 871 | 891 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_010932966.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Elaeis guineensis] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IGF7 | ubiquitinyl hydrolase 1 OS=Cocos nucifera OX=13894 GN=COCNU_08G000240 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology