Basic Information
Locus ID:
COCNU_07G015570
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 64975560 | 64984400 | + | COCNU_07G015570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 43,233.38 Da | 51.65 | 82.01 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 323 | 371 | 2.9E-12 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 43 | 245 | 3.14E-23 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 316 | 378 | 6.96E-17 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 302 | 385 | 1.1E-16 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 43 | 258 | 6.2E-9 | IPR027267 |
| SMART | SM00326 | SH3_2 | 319 | 374 | 3.2E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 316 | 375 | 21.100948 | IPR001452 |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 341 | 357 | 2.5E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 321 | 341 | 2.5E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 357 | 370 | 2.5E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 278 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 173 | 200 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_010942953.1 | SH3 domain-containing protein 2 isoform X1 [Elaeis guineensis] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N563 | SH3 domain-containing protein 1 OS=Cocos nucifera OX=13894 GN=COCNU_07G015570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology