Basic Information
Locus ID:
COCNU_07G015560
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 64931215 | 64962393 | - | COCNU_07G015560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 80,603.52 Da | 36.92 | 89.30 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 279 | 415 | 7.47876E-70 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 70 | 278 | 1.85324E-129 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 91 | 257 | 1.3E-18 | IPR011545 |
| Pfam | PF09382 | RQC domain | 479 | 584 | 8.8E-6 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 310 | 405 | 5.1E-15 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 609 | 669 | 1.8E-7 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 418 | 474 | 1.3E-11 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 127 | 422 | 4.98E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 43 | 278 | 1.6E-90 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 479 | 586 | 1.5E-24 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 605 | 675 | 8.8E-11 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 279 | 475 | 2.9E-64 | IPR027417 |
| SMART | SM00956 | RQC_2 | 483 | 586 | 0.0028 | IPR018982 |
| SMART | SM00487 | ultradead3 | 84 | 287 | 1.5E-26 | IPR014001 |
| SMART | SM00490 | helicmild6 | 325 | 406 | 6.0E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 81 | 504 | 8.8E-162 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 296 | 445 | 19.770615 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 600 | 679 | 12.509218 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 96 | 271 | 22.712927 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 708 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_010942951.1 | mediator of RNA polymerase II transcription subunit 34 isoform X1 [Elaeis guineensis] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N649 | ATP-dependent DNA helicase OS=Cocos nucifera OX=13894 GN=COCNU_07G015560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology