Basic Information
Locus ID:
COCNU_07G015250
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 63741440 | 63744534 | - | COCNU_07G015250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 48,961.09 Da | 47.98 | 74.23 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 144 | 417 | 8.92468E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 382 | 417 | 7.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 278 | 4.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 332 | 0.0077 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 162 | 220 | 9.1E-6 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 126 | 418 | 3.48E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 68 | 420 | 7.5E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 197 | 235 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 375 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 290 | 332 | 0.002 | IPR001680 |
| SMART | SM00320 | WD40_4 | 378 | 417 | 2.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 194 | 6.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 278 | 5.2E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 385 | 418 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 162 | 203 | 11.343905 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 246 | 280 | 11.629227 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 246 | 287 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 385 | 418 | 12.513543 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 404 | 418 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 265 | 279 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010918104.1 | cell division cycle 20.2, cofactor of APC complex [Elaeis guineensis] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N5I5 | Cell division cycle 20.2, cofactor of APC complex OS=Cocos nucifera OX=13894 GN=COCNU_07G015250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology