Basic Information
Locus ID:
COCNU_07G015180
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 63412594 | 63412929 | - | COCNU_07G015180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 12,517.65 Da | 53.99 | 112.25 | 0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 59 | 89 | 4.4E-10 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 95 | 2.52E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 92 | 2.1E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 66 | 89 | 9.066582 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010918197.1 | E3 ubiquitin-protein ligase ATL23-like [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0IGF1 | E3 ubiquitin-protein ligase ATL23-like OS=Cocos nucifera OX=13894 GN=COCNU_07G015180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology