Basic Information
Locus ID:
COCNU_07G014940
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 61838546 | 61839042 | - | COCNU_07G014940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.14 | 14,940.68 Da | 54.14 | 49.60 | -1.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 32 | 95 | 1.81537E-17 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 32 | 99 | 2.2E-14 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 29 | 102 | 2.09E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 15 | 108 | 8.1E-20 | IPR036910 |
| SMART | SM00398 | hmgende2 | 31 | 100 | 2.0E-14 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 32 | 99 | 15.00258 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_029120126.1 | high mobility group B protein 9-like [Elaeis guineensis] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IH21 | Putative High mobility group B protein 9 OS=Cocos nucifera OX=13894 GN=COCNU_07G014940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology