Basic Information
Locus ID:
COCNU_07G013020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 45609434 | 45644791 | - | COCNU_07G013020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 175,389.73 Da | 59.43 | 72.97 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 814 | 1141 | 3.70378E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 1408 | 1513 | 3.31237E-53 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 834 | 1218 | 8.2E-66 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1257 | 1293 | 3.6E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1404 | 1503 | 5.1E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1149 | 1560 | 5.32E-54 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1254 | 1314 | 2.75E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 798 | 1141 | 3.19E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 787 | 877 | 7.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 1391 | 1556 | 5.2E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 906 | 1155 | 2.7E-39 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1242 | 1308 | 6.4E-12 | IPR013083 |
| SMART | SM00487 | ultradead3 | 810 | 1120 | 9.4E-27 | IPR014001 |
| SMART | SM00184 | ring_2 | 1257 | 1295 | 1.3E-6 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1420 | 1503 | 2.9E-17 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 828 | 1103 | 11.911173 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1257 | 1293 | 10.77793 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1395 | 1556 | 13.979571 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1272 | 1281 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1031 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 134 | - | - |
| Coils | Coil | Coil | 1 | 149 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_010908905.1 | helicase-like transcription factor CHR28 isoform X1 [Elaeis guineensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N4W7 | Helicase-like transcription factor CHR28 OS=Cocos nucifera OX=13894 GN=COCNU_07G013020 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology